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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgggatttgtcctttttcaaaccaatttatccatgtcgtttacagTGAATACTACGGGAAGTTTAAGCTATACTGCTGTGAGGCATTCAACATTCTGAGGAAGTCCAGCAACTTAATACTGAACCTCTTCTATTTAATGTCAAAT

Basic information

species Selaginella moellendorffii
transcript EFJ15325
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09904 (Selaginella moellendorffii), 3'ss of exon 13
lower sequence: GRMZM2G103721_T01 (Zea mays), 3'ss of exon 15
---------------------------------------gtaacgggatttgtcctttttcaaaccaatttatccatgtcgtttacagTGAATACTACGGGAAGTTTAAGCTATACTGCTGTGAGGCATTCAACATTCTGAGGAAGTCCAGCAACTTAATACTGAACCTCTTCTATTTAATGTCAAAT
                                       ||  | | |  ||     | |||||  || ||     ||| |||| |||  |||| |||   | ||| |||   |||||||| || |||| |||||||||||||||||||||||   | ||  |||| || ||| |  | |||      
gtagttagttgaacaattttgccaagtctttgcttttatgtttcagcagatggatactctcaaa--aacttgcttttgt-gttt-cagCCAATATTACACAAGGTTCAAGTCCTACTGCTGCGAAGCATACAACATTCTGAGGAAGTCCAGCAGTCTCATTTTGAATCTATTCAAGCTGATGGAGCGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacgggatttgtcctttttcaaaccaatttatccatgtcgtttacagTGAATACTACGGGAAGTTTAAGCTATACTGCTGTGAGGCATTCAACATTCTGAGGAAGTCCAGCAACTTAATACTGAACCTCTTCTATTTAATGTCAAAT
                                 tttttcaaa  TA-rich tract