1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtatgtttgagcaatttttatagtttggctaatatttcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAACTGTTTCTTGAGGAGCGGCCG
species | Selaginella moellendorffii |
transcript | EFJ13603 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGT GTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAAEST: gi|169075887|gb|FE483339.1|FE483339
genomic: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGTgtatgtttga ... tcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAA
EST: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGT GTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAAEST: gi|169082562|gb|FE489059.1|FE489059
genomic: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGTgtatgtttga ... tcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAA
EST: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGT GTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAAEST: gi|169082011|gb|FE486961.1|FE486961
genomic: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGTgtatgtttga ... tcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAA
EST: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGT GTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAAEST: gi|169030356|gb|FE440081.1|FE440081
genomic: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGTgtatgtttga ... tcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAA
EST: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGT GTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAA
genomic: ACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGTgtatgtttga ... tcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAA
gtatgtttgagcaatttttatagtttggctaatatttcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAACTGTTTCTTGAGGAGCGGCCG
ggctaat putative branch site (score: 17)
tatttctttt CT-rich tract
taatatttcttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttgagcaatttttatagtttggctaatatttcttttatagGTGGGTCTTTTGAAGGAAGCTTCGAATAAGGCCCATAATGCCGAGCTGAAACTGTTTCTTGAGGAGCGGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG