1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtatactatcttatgtctccaatcactaatgatacaaattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAGTGGGTGGAGACCTTAATGAG
species | Selaginella moellendorffii |
transcript | EFJ11805 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAG CGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAEST: gi|169077651|gb|FE484913.1|FE484913
genomic: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAGgtatactatc ... aattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
EST: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAG CGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAEST: gi|169019859|gb|FE426946.1|FE426946
genomic: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAGgtatactatc ... aattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
EST: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAG CGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAEST: gi|169065009|gb|FE475081.1|FE475081
genomic: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAGgtatactatc ... aattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
EST: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAG CGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAEST: gi|169081293|gb|FE489283.1|FE489283
genomic: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAGgtatactatc ... aattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
EST: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAG CGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAEST: gi|169080569|gb|FE490522.1|FE490522
genomic: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAGgtatactatc ... aattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
EST: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAG CGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAEST: gi|169042559|gb|FE451014.1|FE451014
genomic: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAGgtatactatc ... aattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
EST: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAG CGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
genomic: ATCTTGAAGTCATTCTACAACATCTTATGTTTGCTTTTAGTAAATACCAGgtatactatc ... aattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCA
gtatactatcttatgtctccaatcactaatgatacaaattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAGTGGGTGGAGACCTTAATGAG
cactaat putative branch site (score: 4)
taatgatacaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactatcttatgtctccaatcactaatgatacaaattttacagCGCCGTAACCTACGAATTTTGTACGATGCCATCGGAACGCTAGCAGATGCAGTGGGTGGAGACCTTAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA