Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcagttttttccccaggggtgggtcttccctgacagtgtgagcatgcagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGAGTTTGAGTACAAAGATCCAGTTGATGGTTCCGTCGCAAGCCACCAAGGA

Basic information

species Selaginella moellendorffii
transcript EFJ05270
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05270 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 15
----------------------------------------------------------------------------------------------------------------gtaagcctcagttt---tttccccaggggtgggtcttccctgacagtgt---gagcatg-------cagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGAGTTTGAGTACAAAGATCCAGTTGATGGTTCCGTCGCAAGCCACCAAGGA
                                                                                                                |||    ||| ||        | ||    ||    ||     ||  |||    || ||        |||  |  |    | ||| || ||||||||  |||   |    | ||| ||||||||||||||||| |||||||||||||| || ||  | |  ||||| || 
gtaagtggaactttttcaaatgtacaggaatctcaaacttgaactttttagaaccatgtccaagtactcccgtgtatatatcaacttcagaaaattatgatagtactcccgtgtatatatcaattcaagcaatcgcaaacttgaactttttagaaccatgtctaaagtatctctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCAGTTGATGGCTCTGTGTCCAAGCACCAGGGC

upper sequence: EFJ05270 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: PP1S168_70V6.3 (Physcomitrella patens), 3'ss of exon 16
----------------------------------------------------------------------------------------------------------gtaagcctcagttttttccccaggggtg----ggtctt--ccctg-acagtgtgagcatgcagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGAGTTTGAGTACAAAGATCCAGTTGATGGTTCCGTCGCAAGCCACCAAGGA
                                                                                                          ||     ||  | |||| || |  | ||    ||||    | ||  ||| | ||      ||| ||  |      |||  || | ||||| ||||   |  ||||||||||||||||||||||||| || ||||||||    |||||  |  | || || || 
gtaagtttcgaattcgttttgtagcactgcctctgatttatacgggtcaactaattccagcaataattttctagaaaaaacgatgcatgtaatcactgcttagtgtgtgcttatctttctttttccaattgctgcattggtcacaactctatacattctgctggctcagTATGATCAAGAAGATCAGACCAGATGTTGCTGAGGTTCAAGAAGCAGACGAGTTTGAGTACAAGGACCCAGTTGACCAGTCCGTGTCTTGTCATCAGGGT

upper sequence: EFJ05270 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: PP1S4_12V6.3 (Physcomitrella patens), 3'ss of exon 16
-------------------------------------------------------------------------------------------------------------------gtaagcctcagttttttccccaggggtg-ggtcttccctgacagt-----gtgagcatg---cagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGAGTTTGAGTACAAAGATCCAGTTGATGGTTCCGTCGCAAGCCACCAAGGA
                                                                                                                   | ||  || | |||  |    |    ||   ||| | | ||  ||     |||    ||   |||  |  |    | |||| || ||||||| || |   |  ||||||| |||||||||||||| || |||||||||||    ||| |  | |||||||| || 
gtaacttccgcactcattttgtgccactgcttctcaaatttatttccgtgtttattgtgtggcgcattcaagccgtagtggtccaggtggctgttgagaaatgtcgcttattaatgcaattctgaatttgcttgtaatttttgtactctgctcagagtgtgatttgtggatctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGAGTTTGAGTATAAGGATCCAGTTGACCAGTCCATATCCAGCCACCAGGGT

upper sequence: EFJ05270 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: PP1S4_12V6.1 (Physcomitrella patens), 3'ss of exon 16
-------------------------------------------------------------------------------------------------------------------gtaagcctcagttttttccccaggggtggg-tcttccctgacagtg-----tgagcatg---cagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGAGTTTGAGTACAAAGATCCAGTTGATGGTTCCGTCGCAAGCCACCAAGGA
                                                                                                                   | ||  || | |||  |    |    ||   ||| | | ||  |||     ||    ||   |||  |  |    | |||| || ||||||| || |   |  ||||||| |||||||||||||| || |||||||||||                         
gtaacttccgcactcattttgtgccactgcttctcaaatttatttccgtgtttattgtgtggcgcattcaagccgtagtggtccaggtggctgttgagaaatgtcgcttattaatgcaattctgaatttgcttgtaatttttgtactctgctcagAGTGTGATTTGTGGATCTGACCCAGCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGAGTTTGAGTATAAGGATCCAGTTGA-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169104054|gb|FE505067.1|FE505067
EST:     GTGATGGACCATTTGGTGGAACTCCAGTCCTCCATACCAGATTTGAACAA                         AATAGTGTCGGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGA
genomic: GTGATGGACCATTTGGTGGAACTCCAGTCCTCCATACCAGATTTGAACAAgtaagcctca ... gagcatgcagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGA
EST: gi|169047658|gb|FE454826.1|FE454826
EST:     GTGATGGACCATTTGGTGGAACTCCAGTCCTCCATACCAGATTTGAACAA                         AATAGTGTCGGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGA
genomic: GTGATGGACCATTTGGTGGAACTCCAGTCCTCCATACCAGATTTGAACAAgtaagcctca ... gagcatgcagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcctcagttttttccccaggggtgggtcttccctgacagtgtgagcatgcagAATAGTGTCAGGGATTCGATCTGATGTCGCTGGTATCAAAGAAGCAGACGAGTTTGAGTACAAAGATCCAGTTGATGGTTCCGTCGCAAGCCACCAAGGA
                                 ccctgac  putative branch site (score: 3)
        agtttttt  TA-rich tract