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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaacaaacgcggccagttttgtatgcgctagtgaaggagctgactatttatattttttcaaagACACCACCAGTATGGATGGAAACTATGGTTGTTACTGGAAATAAATCACACACACAAGACGAACCATATGAAAATAAATCAACGCCGTGGAATGAAAAAT

Basic information

species Selaginella moellendorffii
transcript EFJ32914
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169109433|gb|FE509542.1|FE509542
EST:     GTGGATCTTCTCAACCACATGGCAACTGTCTTGGCCGCCAGTAAGAGCAA                         ACACCACCAGTATGGATGGAAACTATGGTTGTTACTGGAAATAAATCACAC
genomic: GTGGATCTTCTCAACCACATGGCAACTGTCTTGGCCGCCAGTAAGAGCAAgtgagaaaca ... tttttcaaagACACCACCAGTATGGATGGAAACTATGGTTGTTACTGGAAATAAATCACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcggccagttttgtatgcgctagtgaaggagctgactatttatattttttcaaagACACCACCAGTATGGATGGAAACTATGGTTGTTACTGGAAATAAATCACACACACAAGACGAACCATATGAAAATAAATCAACGCCGTGGAATGAAAAAT
                             agctgac  putative branch site (score: 3)
                                          tattttttc  putative PPT
                                tgactatttatatttt  TA-rich tract