1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaggttttcatctcattcaatttcatttgatttgagcttttcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATTTCCTCGATGGTGGGAATAACCGACATACCCGATTGGTGTTATATGGAAT
species | Selaginella moellendorffii |
transcript | EFJ32660 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GACGTCCCATTTAATGGGACAG GCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATTEST: gi|169111105|gb|FE514242.1|FE514242
genomic: GACGTCCCATTTAATTGGACAGgtaaggtttt ... tcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATT
EST: GCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAG GCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATTEST: gi|169071160|gb|FE477837.1|FE477837
genomic: GCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAGgtaaggtttt ... tcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATT
EST: GCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAG GCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATTEST: gi|169083988|gb|FE493628.1|FE493628
genomic: GCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAGgtaaggtttt ... tcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATT
EST: TTGTGGGTGGTTCGCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAG GCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATTEST: gi|169030220|gb|FE437098.1|FE437098
genomic: TTGTGGGTGGTTCGCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAGgtaaggtttt ... tcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATT
EST: TTGTGGGTGGTTCGCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAG GCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATT
genomic: TTGTGGGTGGTTCGCATGGTGGGTTTTTGACGTCCCATTTAATTGGACAGgtaaggtttt ... tcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATT
gtaaggttttcatctcattcaatttcatttgatttgagcttttcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATTTCCTCGATGGTGGGAATAACCGACATACCCGATTGGTGTTATATGGAAT
atttgat putative branch site (score: 5)
cttttcttgttt putative PPT
aatttcatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttttcatctcattcaatttcatttgatttgagcttttcttgtttagGCGCCAGGTCGATTCGTTACTGGAATAGTACGGAATCCCGTGTGCAACATTTCCTCGATGGTGGGAATAACCGACATACCCGATTGGTGTTATATGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG