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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgaaaacctgggtgattgctctggcactaagaagcgcactctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAGTTGCCGAGTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGA

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169115018|gb|FE516383.1|FE516383
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAAGAGGATTCACCGAGGTGGACTTTGAGAAA
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAA-GAGGATTCACCGAGGTGGACTTTGAGAAA
EST: gi|169041586|gb|FE449547.1|FE449547
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169030970|gb|FE440331.1|FE440331
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169097027|gb|FE498418.1|FE498418
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169087280|gb|FE491693.1|FE491693
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169035180|gb|FE442571.1|FE442571
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169019624|gb|FE427973.1|FE427973
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169062066|gb|FE469151.1|FE469151
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169044082|gb|FE451668.1|FE451668
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169070247|gb|FE478068.1|FE478068
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169062626|gb|FE470296.1|FE470296
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169026368|gb|FE433459.1|FE433459
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTCCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169102881|gb|FE505246.1|FE505246
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169082302|gb|FE488045.1|FE488045
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169067937|gb|FE474782.1|FE474782
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169046861|gb|FE455057.1|FE455057
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169036058|gb|FE446764.1|FE446764
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169036891|gb|FE443851.1|FE443851
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169080653|gb|FE487174.1|FE487174
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169088705|gb|FE491539.1|FE491539
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169067649|gb|FE475833.1|FE475833
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169113159|gb|FE514405.1|FE514405
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169035181|gb|FE442572.1|FE442572
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCTCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169077298|gb|FE485600.1|FE485600
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169030299|gb|FE440024.1|FE440024
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169025096|gb|FE434696.1|FE434696
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169114785|gb|FE516046.1|FE516046
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169087153|gb|FE493100.1|FE493100
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169075644|gb|FE482030.1|FE482030
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169070246|gb|FE478067.1|FE478067
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169035575|gb|FE445345.1|FE445345
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169075798|gb|FE482795.1|FE482795
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169087446|gb|FE492223.1|FE492223
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169061497|gb|FE469596.1|FE469596
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169101299|gb|FE501987.1|FE501987
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169019269|gb|FE428182.1|FE428182
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169052582|gb|FE460921.1|FE460921
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169112011|gb|FE510689.1|FE510689
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169113160|gb|FE514406.1|FE514406
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169069491|gb|FE479535.1|FE479535
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169087332|gb|FE491745.1|FE491745
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169047242|gb|FE456491.1|FE456491
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169051133|gb|FE458680.1|FE458680
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169048577|gb|FE454446.1|FE454446
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169074935|gb|FE483817.1|FE483817
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169096115|gb|FE500275.1|FE500275
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169088634|gb|FE491520.1|FE491520
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169114933|gb|FE515882.1|FE515882
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169094799|gb|FE492950.1|FE492950
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169112012|gb|FE510690.1|FE510690
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169094384|gb|FE495584.1|FE495584
EST:     CACAGTGCCTGGAGATGTTTTTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169019686|gb|FE427489.1|FE427489
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169023492|gb|FE431403.1|FE431403
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169115017|gb|FE516382.1|FE516382
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169067635|gb|FE475832.1|FE475832
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
EST: gi|169044083|gb|FE451669.1|FE451669
EST:     CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGG                         GAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG
genomic: CACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 69

TCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCTGCCAACAAGAACACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCGGAGTAAGAATGGgtatgatgaa ... ctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAGTTGCCGAGTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgatgaaaacctgggtgattgctctggcactaagaagcgcactctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAGTTGCCGAGTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGA
                                       cgcactctttttcc  CT-rich tract
                                            tcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgatgaaaacctgggtgattgctctggcactaagaagcgcactctttttccagGAACTCCTGCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAGTTGCCGAGTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA