1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaagtctctgattttctttctattcctaatttacaaacgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTGGCTACGTTTTACGAGCGGGCTGGAAAGGTTAAATGCCTTGGTAGTCCCG
species | Selaginella moellendorffii |
transcript | EFJ30330 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTC GCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTGEST: gi|169098593|gb|FE497219.1|FE497219
genomic: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTCgtaagtctct ... cgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
EST: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTC GCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTGEST: gi|169081165|gb|FE489259.1|FE489259
genomic: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTCgtaagtctct ... cgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
EST: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTC GCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTGEST: gi|169077659|gb|FE484921.1|FE484921
genomic: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTCgtaagtctct ... cgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
EST: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTC GCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATTTGGGTGCACGTTTGEST: gi|169034854|gb|FE444043.1|FE444043
genomic: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTCgtaagtctct ... cgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
EST: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTC GCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTGEST: gi|169116508|gb|FE517533.1|FE517533
genomic: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTCgtaagtctct ... cgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
EST: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTC GCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATTTGGGTGCACGTTTGEST: gi|169026426|gb|FE435779.1|FE435779
genomic: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTCgtaagtctct ... cgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
EST: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTC GCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
genomic: ACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGGTCGACTCgtaagtctct ... cgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTG
gtaagtctctgattttctttctattcctaatttacaaacgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTGGCTACGTTTTACGAGCGGGCTGGAAAGGTTAAATGCCTTGGTAGTCCCG
tcctaat putative branch site (score: 43)
attttctttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctctgattttctttctattcctaatttacaaacgccgcgcagGCCGAAATGCCTGCCGACAGTGGTTATCCAGCGTATCTGGGTGCACGTTTGGCTACGTTTTACGAGCGGGCTGGAAAGGTTAAATGCCTTGGTAGTCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA