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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagaagaatatgatagaaatagtctcaaaactaaaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTAGCTAAATAACCGGAAAAATCTTAGGGTTC

Basic information

species Selaginella moellendorffii
transcript EFJ29932
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169033459|gb|FE441803.1|FE441803
EST:     ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCAT                         GACCGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTTATTAGCTAA
genomic: ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaa ... aaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTT-A---GCTAA
EST: gi|169066588|gb|FE474148.1|FE474148
EST:     GTTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCAT                         GACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTAGCTAAATAA
genomic: ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaa ... aaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTAGCTAAATAA
EST: gi|169081850|gb|FE487957.1|FE487957
EST:     ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCAT                         GACCGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTTATTAGCTAA
genomic: ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaa ... aaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTT-A---GCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggagaagaatatgatagaaatagtctcaaaactaaaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTAGCTAAATAACCGGAAAAATCTTAGGGTTC
                                        aactaaa  putative branch site (score: 2)
                         aatatgatagaaata  TA-rich tract