1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagactagatttgattgcttcgtcttgctctatgctaatcctttgttttggcgcagAATGTACAAGAAGCAGAGAAGCCATCCGAGGGATACTACATTCGCTCCGGGATTACTGTGATATTGAAAAACGCAACGATTGCAGATGGAACTGTAATCT
species | Selaginella moellendorffii |
transcript | EFJ28514 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCGACAAAAATGTTCGAATAGGAAAGAACGTCGTCATCGCCAACAAAGAC AATGTACAAGAAGCAGAGAAGCCATCCGAGGGATACTACATTCGCTCCGGGEST: gi|169103889|gb|FE508373.1|FE508373
genomic: TCGACAAAAATGTTCGAATAGGAAAGAACGTCGTCATCGCCAACAAAGACgtgagactag ... tttggcgcagAATGTACAAGAAGCAGAGAAGCCATCCGAGGGATACTACATTCGCTCCGGG
EST: TCGACAAAAATGTTCGAATAGGAAAGAACGTCGTCATCGCCAACAAAGAC AATGTACAAGAAGCAGAGAAGCCATCCGAGGGATACTACATTCGCTCCGGG
genomic: TCGACAAAAATGTTCGAATAGGAAAGAACGTCGTCATCGCCAACAAAGACgtgagactag ... tttggcgcagAATGTACAAGAAGCAGAGAAGCCATCCGAGGGATACTACATTCGCTCCGGG
agactagatttgattgcttcgtcttgctctatgctaatcctttgttttggcgcagAATGTACAAGAAGCAGAGAAGCCATCCGAGGGATACTACATTCGCTCCGGGATTACTGTGATATTGAAAAACGCAACGATTGCAGATGGAACTGTAATCT
tgctaat putative branch site (score: 71)
tcctttgtttt CT-rich tract
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagactagatttgattgcttcgtcttgctctatgctaatcctttgttttggcgcagAATGTACAAGAAGCAGAGAAGCCATCCGAGGGATACTACATTCGCTCCGGGATTACTGTGATATTGAAAAACGCAACGATTGCAGATGGAACTGTAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA