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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcacggaaatcttctctttagctagactcatgttgagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAGGACTTCACGGCTCCTTTGTTCCGGATCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ26297
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169052725|gb|FE461155.1|FE461155
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169083877|gb|FE492789.1|FE492789
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169077256|gb|FE485142.1|FE485142
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169078485|gb|FE488360.1|FE488360
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169053211|gb|FE462486.1|FE462486
EST:     GCAGGACTTTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169039037|gb|FE450443.1|FE450443
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169078955|gb|FE487634.1|FE487634
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169094797|gb|FE492948.1|FE492948
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
EST: gi|169039036|gb|FE450442.1|FE450442
EST:     GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAG                         CAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG
genomic: GCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 31

TAGCTTTCAAGACATAAAGGACTCAACGGGTATTGAAGACAAAGAGCTCCGCAGGACTCTGCAGTCCTTGGCTTGCGGCAAGGTTCGAATTTTGCAAAAGgtgggcacgg ... gagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAGGACTTCACGGCTCCTTTGTTCCGGATCAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgggcacggaaatcttctctttagctagactcatgttgagctaccagCAACCCAAAGGGAGAGAGGTGGAGGACGACGACGTGTTTACGTTCAATGAGGACTTCACGGCTCCTTTGTTCCGGATCAAG
                              aaatctt  TA-rich tract