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gtaacactgcttgctttcttgttgtctctctcagaggctaaactaaaaagacttgtctcgcagATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCAGAACTTTCATGGACCAATGTCGAT
species | Selaginella moellendorffii |
transcript | EFJ23884 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCTACATCCAGCTATCGGCCCATTGTGGAACATCTTTCGTCAAAAG ATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCAEST: gi|169071687|gb|FE476596.1|FE476596
genomic: CTCTTCTACATCCAGCTATCGGCCCATTGTGGAACATCTTTCGTCAAAAGgtaacactgc ... tgtctcgcagATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCA
EST: CTCTTCTACATCCAGCTATCGGCCCATTGTGGAACATCTTTCGTCAAAAG ATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCAEST: gi|169071686|gb|FE476595.1|FE476595
genomic: CTCTTCTACATCCAGCTATCGGCCCATTGTGGAACATCTTTCGTCAAAAGgtaacactgc ... tgtctcgcagATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCA
EST: ACATCCAGCTATCGGCCCATTGTGGAACATCTTTCGTCAAAAG ATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCA
genomic: ACATCCAGCTATCGGCCCATTGTGGAACATCTTTCGTCAAAAGgtaacactgc ... tgtctcgcagATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCA
gcttgctttcttgttgtctctctcagaggctaaactaaaaagacttgtctcgcagATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCAGAACTTTCATGGACCAATGTCGAT
aactaaa putative branch site (score: 13)
cttgtctc putative PPT
taaactaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacactgcttgctttcttgttgtctctctcagaggctaaactaaaaagacttgtctcgcagATTTATGGCGGGTCCATCCGAAAAGGATCAGAGGTGCAGTTAGAAATCTCAGAACTTTCATGGACCAATGTCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA