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gtagtgttctttctctttttctttgttttctgccactagagcaagatcgtttttacagGTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATGGAGGGAGTCCATGCCTGGTGCACCGGAAAGAGCTTTCTGGAGGTGTTGA
species | Selaginella moellendorffii |
transcript | EFJ23732 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAG GTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATGEST: gi|169097392|gb|FE497158.1|FE497158
genomic: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAGgtagtgttct ... gtttttacagGTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATG
EST: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAG GTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATGEST: gi|169077129|gb|FE484508.1|FE484508
genomic: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAGgtagtgttct ... gtttttacagGTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATG
EST: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAG GTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATGEST: gi|169049229|gb|FE459505.1|FE459505
genomic: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAGgtagtgttct ... gtttttacagGTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATG
EST: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAG GTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATG
genomic: AGCTCCAGGACACAGCCAGGCAAGTTGGAAAACTCCAAGTGGAATGCAAGgtagtgttct ... gtttttacagGTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATG
gtgttctttctctttttctttgttttctgccactagagcaagatcgtttttacagGTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATGGAGGGAGTCCATGCCTGGTGCACCGGAAAGAGCTTTCTGGAGGTGTTGA
tcgttttt CT-rich tract
tttttctttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgttctttctctttttctttgttttctgccactagagcaagatcgtttttacagGTTCCAGTCGATGTGGAGGAATACGTGAATTCGTTTCGGCCGGATATAATGGAGGGAGTCCATGCCTGGTGCACCGGAAAGAGCTTTCTGGAGGTGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG