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gtaagaagaactttcagagtcttcgcttttccgctcatgtatttatttataacctccagGATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAG
species | Selaginella moellendorffii |
transcript | EFJ21593 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TACCAGGACGTGGTTATTCCCGAAGCCTATGAGCGCTTGATTTTGGACAC GATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAGEST: gi|169031484|gb|FE437194.1|FE437194
genomic: TACCAGGACGTGGTTATTCCCGAAGCCTATGAGCGCTTGATTTTGGACACgtaagaagaa ... taacctccagGATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAG
EST: TACCAGGACGTGGTTATTCCCGAAGCCTATGAGCGCTTGATTTTGGACAC GATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAGEST: gi|169075232|gb|FE481527.1|FE481527
genomic: TACCAGGACGTGGTTATTCCCGAAGCCTATGAGCGCTTGATTTTGGACACgtaagaagaa ... taacctccagGATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAG
EST: TACCAGGACGTGGTTATTCCCGAAGCCTATGAGCGCTTGATTTTGGACAC GATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAG
genomic: TACCAGGACGTGGTTATTCCCGAAGCCTATGAGCGCTTGATTTTGGACACgtaagaagaa ... taacctccagGATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAG
gaagaactttcagagtcttcgcttttccgctcatgtatttatttataacctccagGATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAG
ttataac putative branch site (score: 12)
cctcc CT-rich tract
tcatgtatttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagaactttcagagtcttcgcttttccgctcatgtatttatttataacctccagGATCCGCGGAGATCAGCAACACTTTGTTCGGAGGGACGAACTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA