1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagtcattacctctgtttacatctattggtggtagtgactataacttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTGATGCGTGTGAATGTATATAAGAACCAG
species | Selaginella moellendorffii |
transcript | EFJ15171 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTA GTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTGEST: gi|169065728|gb|FE474357.1|FE474357
genomic: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTAgtaagtcatt ... acttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTG
EST: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTA GTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTGEST: gi|169113300|gb|FE515251.1|FE515251
genomic: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTAgtaagtcatt ... acttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTG
EST: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTA GTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTGEST: gi|169113299|gb|FE515250.1|FE515250
genomic: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTAgtaagtcatt ... acttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTG
EST: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTA GTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTGEST: gi|169039361|gb|FE449101.1|FE449101
genomic: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTAgtaagtcatt ... acttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTG
EST: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTA GTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTG
genomic: TACTTCCATATAAAATGCTGGACTTTCTCGACGCCCCGGTGCCTTTTGTAgtaagtcatt ... acttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTG
gtaagtcattacctctgtttacatctattggtggtagtgactataacttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTGATGCGTGTGAATGTATATAAGAACCAG
ctataac putative branch site (score: 5)
cttctcc CT-rich tract
tataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcattacctctgtttacatctattggtggtagtgactataacttctccagGTTGGCGTCCAACACAAAAGCTCTGAAGTGCGCTCCAAAATTTCCAACTTGATGCGTGTGAATGTATATAAGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC