1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgtgaacttaggacgtctttgtgtttgtactgactacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAAATCTGGCCACAACTCTGGGATCGCGTGAGCAGCTGGCGATTGCGGAGT
species | Selaginella moellendorffii |
transcript | EFJ12438 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCG GTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAEST: gi|169108185|gb|FE512558.1|FE512558
genomic: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCGgtatgtgaac ... tacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAA
EST: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCG GTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAEST: gi|169042175|gb|FE454218.1|FE454218
genomic: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCGgtatgtgaac ... tacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAA
EST: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCG GTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAEST: gi|169031092|gb|FE436878.1|FE436878
genomic: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCGgtatgtgaac ... tacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAA
EST: CATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCG GTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAEST: gi|169108186|gb|FE512559.1|FE512559
genomic: CATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCGgtatgtgaac ... tacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAA
EST: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCG GTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAEST: gi|169113410|gb|FE514737.1|FE514737
genomic: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCGgtatgtgaac ... tacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAA
EST: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCG GTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAA
genomic: CCATGCATGACGCGTTGAGTATTGTGAAGCGTACACTGGAATCTAGTGCGgtatgtgaac ... tacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAA
gtatgtgaacttaggacgtctttgtgtttgtactgactacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAAATCTGGCCACAACTCTGGGATCGCGTGAGCAGCTGGCGATTGCGGAGT
tactgac putative branch site (score: 7)
ctacctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgaacttaggacgtctttgtgtttgtactgactacctcgtagGTCGTTGCTGGAGGTGGTGCTGTCGAGGCTGCATTGTCGGTGTACCTGGAAAATCTGGCCACAACTCTGGGATCGCGTGAGCAGCTGGCGATTGCGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG