1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgtgtttgaattccgttgtggtggcgtgacgggctttgttggcagCTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGGGGATCGCCTGTCCGTGTATGATGTATAGCGTAACATGGTGGCTCGGCTG
species | Selaginella moellendorffii |
transcript | EFJ06197 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAG CTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGGEST: gi|169099228|gb|FE502066.1|FE502066
genomic: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAGgtttgtgttt ... ttgttggcagCTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGG
EST: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAG CTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGGEST: gi|169037985|gb|FE443619.1|FE443619
genomic: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAGgtttgtgttt ... ttgttggcagCTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGG
EST: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAG CTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGGEST: gi|169066918|gb|FE473672.1|FE473672
genomic: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAGgtttgtgttt ... ttgttggcagCTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGG
EST: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAG CTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGG
genomic: CGTGACATAGCCGTGGTGTTACTCCCGTGTAAACATCGAGTCCTTTGCAGgtttgtgttt ... ttgttggcagCTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGG
gtttgtgtttgaattccgttgtggtggcgtgacgggctttgttggcagCTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGGGGATCGCCTGTCCGTGTATGATGTATAGCGTAACATGGTGGCTCGGCTG
ctttgtt CT-rich tract
tttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtttgaattccgttgtggtggcgtgacgggctttgttggcagCTTGTGCTCCGAAAGATGCAAACACTGCCCGATATGCAGAAGTTACATCGGGGATCGCCTGTCCGTGTATGATGTATAGCGTAACATGGTGGCTCGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG