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gtgggaatttttccattccagaagagaagaaaaagaaattctcacttgataacgtgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCAAAGCGACAAAAGCTACACATTTAG
species | Selaginella moellendorffii |
transcript | EFJ04362 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATGTAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169060229|gb|FE467591.1|FE467591
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATATAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169077744|gb|FE485422.1|FE485422
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATATAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169060230|gb|FE467592.1|FE467592
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATATAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169044638|gb|FE452432.1|FE452432
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATGTAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169034104|gb|FE444255.1|FE444255
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATGTAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169028546|gb|FE437257.1|FE437257
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATATAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169022071|gb|FE430952.1|FE430952
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATATAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCAEST: gi|169069994|gb|FE476463.1|FE476463
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
EST: TATGGTGGATCATTCTCGCGAGTCTCGCCATCAATGTAGCTTGGCAAAAG GTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCGAAGTATCCCTCA
genomic: TATGGTGGATCATTCTCGCGAGTCTCGCCGTCAATATAGCTTGGCAAAAGgtgggaattt ... tgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCA
tttccattccagaagagaagaaaaagaaattctcacttgataacgtgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCAAAGCGACAAAAGCTACACATTTAG
tgataac putative branch site (score: 13)
aagaaaaagaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggaatttttccattccagaagagaagaaaaagaaattctcacttgataacgtgcgttccagGTCGTAGTGGAAGGCCCACTGGCACGGATTTTAGCTGCAAAGTATCCCTCAAAGCGACAAAAGCTACACATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG