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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaagcagcaaacagagccctgccatggatgtgagcaaaggcacatatctatttcgataaatgcatttcgatagaatttctcctcttactgttggtttgaattcattgaccaggttttcttagCGAAGTAGGTTGCTTGCGAGCAAGTACGAGCAAGGTTGTCTGTTGCCATTTCTCGTCCGACGGGAAACTTCTTGCAAGCGCCGGACACGATAAAAAG

Basic information

species Selaginella moellendorffii
transcript EFJ36173
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36173 (Selaginella moellendorffii), 3'ss of exon 12
lower sequence: LOC_Os01g42270.1 (Oryza sativa), 3'ss of exon 12
gtttggaagcagcaaacagagccctgccatggatgtgagcaaaggcacatatctatttcgataaatgcatttcgatagaatttctcctcttactgttggtttgaattcattgaccaggttt--tcttagCGAAGTAGGTTGCTTGCGAGCAAGTACGAGCAAGGTTGTCTGTTGCCATTTCTCGTCCGACGGGAAACTTCTTGCAAGCGCCGGACACGATAAAAAG
              |  || |   |     | ||  |||  | |     | | ||  | ||  |      || |  |||   |     | ||   |    |    ||  |||    |||||  | ||| ||| || |        || |||||||| | ||||||||  ||||| ||||||||||| || ||||||||||| || |  |  || ||          
----------ctttactagggtgttatagagtattagagttatgtgt--tctttagcttgactagaattatttggcagagactaaatgcataacatgttctc---tttgttg-tagGGTTTGGTTTTATCGAGGTTGCAAAAGCTCGTGCAAGTACAAACAAGGTTGATTGTTGTCATTTCTCGTCGGATGGGAAACTTCTAGCCACGGGAGGCCA----------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatagaatttctcctcttactgttggtttgaattcattgaccaggttttcttagCGAAGTAGGTTGCTTGCGAGCAAGTACGAGCAAGGTTGTCTGTTGCCATTTCTCGTCCGACGGGAAACTTCTTGCAAGCGCCGGACACGATAAAAAG
                                   cattgac  putative branch site (score: 3)
                                              ttttctt  putative PPT
                           tttgaatt  TA-rich tract