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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcagagttaaaactttattgcgagcggattttttgaattcataaagcatgcagGTGATGGAGACCGGAACATGATCCTAGGCAACAATTTCTTTGTCACTCCTTCGGACTCTGTTGCCATGATTGCAGCCAATGCTCAGCCATGCATTCCATA

Basic information

species Selaginella moellendorffii
transcript EFJ32824
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32824 (Selaginella moellendorffii), 3'ss of exon 12
lower sequence: GRMZM2G025854_T02 (Zea mays), 3'ss of exon 13
---------------------gtaaagcagagttaaaactttattgcgagcggattttt----tgaattcataa---------agcatg--------cagGTGATGGAGACCGGAACATGATCCTAGGCAACAATTTCTTTGTCACTCCTTCGGACTCTGTTGCCATGATTGCAGCCAATGCTCAGCCATGCATTCCATA
                      || ||     || |    || || | |||  ||  ||    | | |  ||||         ||||||        |||||||||| || ||||||||||| || || || |  |||||| | || || || ||||||||||| || |||||||||||||| ||| ||   ||||| ||
ctatatttggtttgttgcattttatagtgatatttatttattgtttcaagcaaatgcttggtctaactgaataacaactgataagcatgaattgtttcagGTGATGGTGATCGGAACATGATTCTTGGGAAAAGGTTCTTTATTACCCCATCAGACTCTGTTGCAATAATTGCAGCCAATGCACAGACAGCAATTCCTTA

upper sequence: EFJ32824 (Selaginella moellendorffii), 3'ss of exon 12
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 13
----------------------------------------gtaaagcagagttaaaactttattgcgagcggattttttgaattcataaagcat----gcagGTGATGGAGACCGGAACATGATCCTAGGCAACAATTTCTTTGTCACTCCTTCGGACTCTGTTGCCATGATTGCAGCCAATGCTCAGCCATGCATTCCATA
                                         | | ||  ||  |||  || |    ||    | |   |  | |  |  |   |    ||||||||||| ||| | || ||| |  |||| ||||| ||||||||||||||||| |||||||| || || || ||||||||||| ||   |   ||||||||
gtatgaccgtggagagatatctttcaaatgttcttgttcttttaggctaag--aaacattgaccatgaatttagtcactataatagtgcaattttctggcagGTGATGGTGACAGAAATATGGTTTTAGGAAACAAATTCTTTGTCACTCCTTCAGACTCTGTAGCTATCATCGCAGCCAATGCACAAGAAGCAATTCCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcagagttaaaactttattgcgagcggattttttgaattcataaagcatgcagGTGATGGAGACCGGAACATGATCCTAGGCAACAATTTCTTTGTCACTCCTTCGGACTCTGTTGCCATGATTGCAGCCAATGCTCAGCCATGCATTCCATA
                             attttttgaattcata  TA-rich tract