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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtcacattgctgtttgaatgaattattctgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCTGCCAACAAGAACACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCG

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169115018|gb|FE516383.1|FE516383
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169041586|gb|FE449547.1|FE449547
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169030970|gb|FE440331.1|FE440331
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169097027|gb|FE498418.1|FE498418
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169087280|gb|FE491693.1|FE491693
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169035180|gb|FE442571.1|FE442571
EST:     TGTCAGGTGGAACAGAGAATCCCTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169019624|gb|FE427973.1|FE427973
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169062066|gb|FE469151.1|FE469151
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169044082|gb|FE451668.1|FE451668
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169070247|gb|FE478068.1|FE478068
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169062626|gb|FE470296.1|FE470296
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169026368|gb|FE433459.1|FE433459
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169102881|gb|FE505246.1|FE505246
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169082302|gb|FE488045.1|FE488045
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169067937|gb|FE474782.1|FE474782
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169046861|gb|FE455057.1|FE455057
EST:     GTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAAC-TGAAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGC
genomic: GTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTG-AAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGC
EST: gi|169036058|gb|FE446764.1|FE446764
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169036891|gb|FE443851.1|FE443851
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169080653|gb|FE487174.1|FE487174
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169088705|gb|FE491539.1|FE491539
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169067649|gb|FE475833.1|FE475833
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169113159|gb|FE514405.1|FE514405
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169035181|gb|FE442572.1|FE442572
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169077298|gb|FE485600.1|FE485600
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169030299|gb|FE440024.1|FE440024
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169025096|gb|FE434696.1|FE434696
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169114785|gb|FE516046.1|FE516046
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169087153|gb|FE493100.1|FE493100
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169075644|gb|FE482030.1|FE482030
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169070246|gb|FE478067.1|FE478067
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169035575|gb|FE445345.1|FE445345
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169075798|gb|FE482795.1|FE482795
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169087446|gb|FE492223.1|FE492223
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169061497|gb|FE469596.1|FE469596
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169101299|gb|FE501987.1|FE501987
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169019269|gb|FE428182.1|FE428182
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169052582|gb|FE460921.1|FE460921
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169113402|gb|FE514729.1|FE514729
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169112011|gb|FE510689.1|FE510689
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169113160|gb|FE514406.1|FE514406
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169069491|gb|FE479535.1|FE479535
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169087332|gb|FE491745.1|FE491745
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169047242|gb|FE456491.1|FE456491
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169051133|gb|FE458680.1|FE458680
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169048577|gb|FE454446.1|FE454446
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169074935|gb|FE483817.1|FE483817
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169096115|gb|FE500275.1|FE500275
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169088634|gb|FE491520.1|FE491520
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169114933|gb|FE515882.1|FE515882
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169094799|gb|FE492950.1|FE492950
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169112012|gb|FE510690.1|FE510690
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169094384|gb|FE495584.1|FE495584
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169019686|gb|FE427489.1|FE427489
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169023492|gb|FE431403.1|FE431403
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169115017|gb|FE516382.1|FE516382
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169067635|gb|FE475832.1|FE475832
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
EST: gi|169044083|gb|FE451669.1|FE451669
EST:     TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG                         GGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT
genomic: TGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 148

CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAGgtactgtcac ... tgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCTGCCAACAAGAACACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactgtcacattgctgtttgaatgaattattctgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCTGCCAACAAGAACACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCG
                                                  ttattctgtcttcc  CT-rich tract
                             tttgaatgaattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgtcacattgctgtttgaatgaattattctgtcttccagGGGCTGGATGGATCCAGGGTAGAACGAGTCCTCGAGCTGGCTCACATTGCTGCCAACAAGAACACAGTGCCTGGAGATGTCTCTGCGATGGTGCCCGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG