1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactcttgtttttttcacccctcagtttttccatatttgatgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTTGATGGAAACAAAGACTCTGACGAGGTAACGAGACAAACTAAACTAGAC
species | Selaginella moellendorffii |
transcript | EFJ31885 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAG ATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTEST: gi|169103514|gb|FE507387.1|FE507387
genomic: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAGgtactcttgt ... atgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATT
EST: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAG ATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTEST: gi|70669515|gb|DN838092.1|DN838092
genomic: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAGgtactcttgt ... atgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATT
EST: CCA-TCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAG ATGCACGCTCCGAGTCCCTA-GATAAGCGAAGAGTCATCACAGTAAGATATEST: gi|169098631|gb|FE497231.1|FE497231
genomic: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAGgtactcttgt ... atgtctccagATGCACGCTCCGAGTCC-TAAGATAAGCGAAGAGTCATCACAGTAAGATAT
EST: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAG ATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTEST: gi|169058371|gb|FE466073.1|FE466073
genomic: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAGgtactcttgt ... atgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATT
EST: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAG ATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTEST: gi|169060180|gb|FE468166.1|FE468166
genomic: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAGgtactcttgt ... atgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATT
EST: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAG ATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTEST: gi|169100850|gb|FE501699.1|FE501699
genomic: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAGgtactcttgt ... atgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATT
EST: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAG ATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATT
genomic: CCAATCACCACCACATCCAACCTCATCTCAAGCATCCCAGGCTTCTAGAGgtactcttgt ... atgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATT
gtactcttgtttttttcacccctcagtttttccatatttgatgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTTGATGGAAACAAAGACTCTGACGAGGTAACGAGACAAACTAAACTAGAC
atttgat putative branch site (score: 24)
tgtctcc CT-rich tract
ttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcttgtttttttcacccctcagtttttccatatttgatgtctccagATGCACGCTCCGAGTCCTAAGATAAGCGAAGAGTCATCACAGTAAGATATTTGATGGAAACAAAGACTCTGACGAGGTAACGAGACAAACTAAACTAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA