1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtcagtactcttttgttcagcgtgacagatttttacgtggttttctccagGAGCACCACTATGAAACCGTCTCTGGATTCGTCTGTGAAGCATTCGGCTACATTCCACGCACAGGAGAGAGCGTTAAAGTGGTTCTACGAAAGCAAGACT
species | Selaginella moellendorffii |
transcript | EFJ31527 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATACATCAATCGAGGATCTGTCCGAGGCTTTGCAAGTGAAATTCCCGGAG GAGCACCACTATGAAACCGTCTCTGGATTCGTCTGTGAAGCATTCGGCTACEST: gi|169043934|gb|FE453847.1|FE453847
genomic: ATACATCAATCGAGGATCTGTCCGAGGCTTTGCAAGTGAAATTCCCGGAGgtcagtactc ... ttttctccagGAGCACCACTATGAAACCGTCTCTGGATTCGTCTGTGAAGCATTCGGCTAC
EST: ATACATCAATCGAGGATCTGTCCGAGGCTTTGCAAGTGAAATTCCCGGAG GAGCACCACTATGAAACCGTCTCTGGATTCGTCTGTGAAGCATTCGGCTAC
genomic: ATACATCAATCGAGGATCTGTCCGAGGCTTTGCAAGTGAAATTCCCGGAGgtcagtactc ... ttttctccagGAGCACCACTATGAAACCGTCTCTGGATTCGTCTGTGAAGCATTCGGCTAC
gtcagtactcttttgttcagcgtgacagatttttacgtggttttctccagGAGCACCACTATGAAACCGTCTCTGGATTCGTCTGTGAAGCATTCGGCTACATTCCACGCACAGGAGAGAGCGTTAAAGTGGTTCTACGAAAGCAAGACT
ttttctcc CT-rich tract
agattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtactcttttgttcagcgtgacagatttttacgtggttttctccagGAGCACCACTATGAAACCGTCTCTGGATTCGTCTGTGAAGCATTCGGCTACATTCCACGCACAGGAGAGAGCGTTAAAGTGGTTCTACGAAAGCAAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA