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gtaggaaaagatggtctttttcacgttaacattcttgttcttccagGTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTCGCTCCCAAAGTTCCTGGCCGATTCTACTGCTTGTTTGGAGCTCCAATC
species | Selaginella moellendorffii |
transcript | EFJ30477 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACTTCAG GCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTEST: gi|169046397|gb|FE454710.1|FE454710
genomic: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACCTAAGgtaggaaaag ... gttcttccagGTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
EST: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACCTAAG GTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTEST: gi|169057192|gb|FE466757.1|FE466757
genomic: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACCTAAGgtaggaaaag ... gttcttccagGTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
EST: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACCTAAG GTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTEST: gi|169063669|gb|FE471775.1|FE471775
genomic: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACCTAAGgtaggaaaag ... gttcttccagGTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
EST: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACCTAAG GTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
genomic: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACCTAAGgtaggaaaag ... gttcttccagGTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
gtaggaaaagatggtctttttcacgttaacattcttgttcttccagGTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTCGCTCCCAAAGTTCCTGGCCGATTCTACTGCTTGTTTGGAGCTCCAATC
cgttaac putative branch site (score: 5)
cattcttgttcttcc CT-rich tract
ttaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaaaagatggtctttttcacgttaacattcttgttcttccagGTCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTCGCTCCCAAAGTTCCTGGCCGATTCTACTGCTTGTTTGGAGCTCCAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT