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gtatgtccttccaattcaggctcaacgctgattttatcgatggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGATGGCTGACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGG
species | Selaginella moellendorffii |
transcript | EFJ30330 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGG GCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGAEST: gi|169098593|gb|FE497219.1|FE497219
genomic: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGGgtatgtcctt ... atggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
EST: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGG GCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGAEST: gi|169081165|gb|FE489259.1|FE489259
genomic: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGGgtatgtcctt ... atggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
EST: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGG GCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGAEST: gi|169074666|gb|FE480896.1|FE480896
genomic: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGGgtatgtcctt ... atggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
EST: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGG GCATTACTCTGGCTGAGTATTTCCGTGACATGNGCTATAATGTCAGTATGAEST: gi|169077659|gb|FE484921.1|FE484921
genomic: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGGgtatgtcctt ... atggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
EST: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGG GCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGAEST: gi|169034854|gb|FE444043.1|FE444043
genomic: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGGgtatgtcctt ... atggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
EST: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGG GCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGAEST: gi|169026426|gb|FE435779.1|FE435779
genomic: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGGgtatgtcctt ... atggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
EST: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGG GCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
genomic: TAATACTTCAAATATGCCTGTGGCGGCACGAGAAGCTTCAATTTACACGGgtatgtcctt ... atggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGA
gtatgtccttccaattcaggctcaacgctgattttatcgatggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGATGGCTGACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGG
cgctgat putative branch site (score: 23)
tgattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtccttccaattcaggctcaacgctgattttatcgatggtttcagGCATTACTCTGGCTGAGTATTTCCGTGACATGGGCTATAATGTCAGTATGATGGCTGACTCGACGTCGAGATGGGCCGAAGCCTTGCGTGAAATATCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG