1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacttttctttctagctaaaacagcaagcataaaccgtttagtgcctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTTGTTGCGGCTGTCAATTTTGCGAAGGCAACTGGCTTGAAG
species | Selaginella moellendorffii |
transcript | EFJ25849 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG TACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTTEST: gi|169054840|gb|FE463444.1|FE463444
genomic: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTGgtacttttct ... ctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTT
EST: TCCAACGTCTTGGAGATTATATAGATCGGAACAAGCCTCCTCAAATCTTG TACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGATGGCGACCTTEST: gi|169038934|gb|FE449651.1|FE449651
genomic: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTGgtacttttct ... ctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTT
EST: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG TACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTTEST: gi|70670362|gb|DN838939.1|DN838939
genomic: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTGgtacttttct ... ctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTT
EST: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG TACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTTEST: gi|169088100|gb|FE496459.1|FE496459
genomic: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTGgtacttttct ... ctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTT
EST: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG TACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTTEST: gi|169054839|gb|FE463443.1|FE463443
genomic: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTGgtacttttct ... ctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTT
EST: TCCAACGTCTTGGAGATTATATAGATCGGAACAAGCCTCCTCAAATCTTG TACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGATGGCGACCTT
genomic: TCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTGgtacttttct ... ctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTT
tacttttctttctagctaaaacagcaagcataaaccgtttagtgcctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTTGTTGCGGCTGTCAATTTTGCGAAGGCAACTGGCTTGAAG
agctaaa putative branch site (score: 12)
tgcctttttcc putative PPT
taaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttctttctagctaaaacagcaagcataaaccgtttagtgcctttttccagTACGAGGACGATGAACGGGATCGGGTGCTTCTGTCTAGCGACGGCGACCTTGTTGCGGCTGTCAATTTTGCGAAGGCAACTGGCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG