1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgtcatttccatcatacccaagacagtggtaaaggtagaactgcttaaattttttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCTGCACTGAGAGCACAGGGCAAAGTTCCACTTGGTGTGGGCGAGCACACAA
species | Selaginella moellendorffii |
transcript | EFJ25399 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAG GATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCTEST: gi|169040693|gb|FE447328.1|FE447328
genomic: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAGgtttgtcatt ... tttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCT
EST: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAG GATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCTEST: gi|169112863|gb|FE514615.1|FE514615
genomic: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAGgtttgtcatt ... tttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCT
EST: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAG GATACCATCATAATGGGAGGTGATTCCTATGAAACTGAGGCCGAGATTGCTEST: gi|169071156|gb|FE478353.1|FE478353
genomic: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAGgtttgtcatt ... tttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCT
EST: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAG GATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCTEST: gi|169077502|gb|FE485947.1|FE485947
genomic: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAGgtttgtcatt ... tttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCT
EST: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAG GATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCTEST: gi|169087298|gb|FE491711.1|FE491711
genomic: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAGgtttgtcatt ... tttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCT
EST: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAG GATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCT
genomic: ATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGCTTAAGgtttgtcatt ... tttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCT
tccatcatacccaagacagtggtaaaggtagaactgcttaaattttttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCTGCACTGAGAGCACAGGGCAAAGTTCCACTTGGTGTGGGCGAGCACACAA
tttttt CT-rich tract
ttaaattttttgaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcatttccatcatacccaagacagtggtaaaggtagaactgcttaaattttttgaaacagGATACCATCATAATGGGAGCTGATTCCTATGAAACTGAGGCCGAGATTGCTGCACTGAGAGCACAGGGCAAAGTTCCACTTGGTGTGGGCGAGCACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG