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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttatcatgtttggtttttcgtcccgcactttaacctctcctttttcttgtggttcgtttggtagATTGGTCTGGCTATGTCTCCCTTGAGCAACAACTCTTTGTTTTTGGATTACCACCGTAATCCTTTTCCTATGTTTTTCTCACGAGGTCTCAATGTTTCCC

Basic information

species Selaginella moellendorffii
transcript EFJ23750
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169030449|gb|FE438679.1|FE438679
EST:     ACAACCTCAGAAAATCTCCTGGACTTCAGTATCTTTATTACCTCGCCCAG                         ATTGGTCTGGCTATGTCTCCCTTGAGCAACAACTCTTTGTTTTTGGATTAC
genomic: ACAACCTCAGAAAATCTCCTGGACTTCAGTATCTTTATTACCTCGCCCAGgttttatcat ... cgtttggtagATTGGTCTGGCTATGTCTCCCTTGAGCAACAACTCTTTGTTTTTGGATTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttttcgtcccgcactttaacctctcctttttcttgtggttcgtttggtagATTGGTCTGGCTATGTCTCCCTTGAGCAACAACTCTTTGTTTTTGGATTACCACCGTAATCCTTTTCCTATGTTTTTCTCACGAGGTCTCAATGTTTCCC
                  ctttaac  putative branch site (score: 3)
 cctctcctttttcttg  CT-rich tract
 tttttctt  TA-rich tract