1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaggaaaagatggtattttttacgtgaacattcttgttcttccagGCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTCGCTCCCAAAGTTCCTGGCCGATTCTACTGCTTGTTTGGAGCTCCAATC
species | Selaginella moellendorffii |
transcript | EFJ23061 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACTTCAG GCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTEST: gi|169026056|gb|FE434473.1|FE434473
genomic: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACTTCAGgtaggaaaag ... gttcttccagGCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
EST: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACTTCAG GCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTEST: gi|169074603|gb|FE481184.1|FE481184
genomic: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACTTCAGgtaggaaaag ... gttcttccagGCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
EST: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACTTCAG GCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
genomic: AATTTCTTCTTGAAAGATCGGCTAGTACTCACAACGGACTCCAACTTCAGgtaggaaaag ... gttcttccagGCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTT
gtaggaaaagatggtattttttacgtgaacattcttgttcttccagGCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTCGCTCCCAAAGTTCCTGGCCGATTCTACTGCTTGTTTGGAGCTCCAATC
cattcttgttcttcc CT-rich tract
tatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaaaagatggtattttttacgtgaacattcttgttcttccagGCCTAAATCAGCTGGCGAAGTAGCAAACCAGCCTCTCTACCTTCCAGTTTTCGCTCCCAAAGTTCCTGGCCGATTCTACTGCTTGTTTGGAGCTCCAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT