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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaattctgtctctctttgttttttatttctgaattcaaccgcatgtgtaaaacagATGGATTACATCAATACTTCGCACCCGGGATTCATTGGAGGAAGCAAGGCCGTAGAACTCGCGTTGCAGCAACAACGTGGATCTGTGTTAACGGCTTCCA

Basic information

species Selaginella moellendorffii
transcript EFJ15047
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169060132|gb|FE468118.1|FE468118
EST:     AGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAG                         ATGGATTACATNCA-TACTTCGCACCCGGGATTCATTG
genomic: AGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAGgtacaattct ... tgtaaaacagATGGATTACAT-CAATACTTCGCACCCGGGATTCATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattctgtctctctttgttttttatttctgaattcaaccgcatgtgtaaaacagATGGATTACATCAATACTTCGCACCCGGGATTCATTGGAGGAAGCAAGGCCGTAGAACTCGCGTTGCAGCAACAACGTGGATCTGTGTTAACGGCTTCCA
              tttgttttttatttct  TA-rich tract