1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgtgttttctctggtttgatttgggagtagtccgatgcctcgctcttttctttgcagGTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAGCAAAGGCAGTGGCAGGAATGCTAATGTTCGCTACCGTGTCTGGAATTTT
species | Selaginella moellendorffii |
transcript | EFJ14101 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGAGATGATTAAACCCGGTGCACTAGCTGTTATCTCCCCTATAATTGTTG GTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAGEST: gi|169099967|gb|FE503455.1|FE503455
genomic: GGAGATGATTAAACCCGGTGCACTAGCTGTTATCTCCCCTATAATTGTTGgtacgtgttt ... ttctttgcagGTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAG
EST: GGAGATGATTAAACCCGGTGTACTAGCTGTTATCTCCCCGATAATTGTTG GTGTTGTCTTTEST: gi|169054592|gb|FE462676.1|FE462676
genomic: GGAGATGATTAAACCCGGTGCACTAGCTGTTATCTCCCCTATAATTGTTGgtacgtgttt ... ttctttgcagGTGTTGTCTTT
EST: GGAGATGATTAAACCCGGTGCACTAGCTGTTATCTCCCCTATAATTGTTG GTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAGEST: gi|169078439|gb|FE488314.1|FE488314
genomic: GGAGATGATTAAACCCGGTGCACTAGCTGTTATCTCCCCTATAATTGTTGgtacgtgttt ... ttctttgcagGTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAG
EST: GGAGATGATTAAACCCGGTGCACTAGCTGTTATCTCCCCTATAATTGTTG GTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAG
genomic: GGAGATGATTAAACCCGGTGCACTAGCTGTTATCTCCCCTATAATTGTTGgtacgtgttt ... ttctttgcagGTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAG
tgttttctctggtttgatttgggagtagtccgatgcctcgctcttttctttgcagGTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAGCAAAGGCAGTGGCAGGAATGCTAATGTTCGCTACCGTGTCTGGAATTTT
gtttgat putative branch site (score: 14)
tgcctcgctcttttct putative PPT
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgttttctctggtttgatttgggagtagtccgatgcctcgctcttttctttgcagGTGTTGTCTTTAGAATAGTAGGAGTTTACACGGAGCAGCCACTGCTGGGAGCAAAGGCAGTGGCAGGAATGCTAATGTTCGCTACCGTGTCTGGAATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG