1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gcaagcgtttctctcttaaaatttctcttgtctgattccacttccagGTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAGATCTCCCCTAAGAGGATTTTACCTCGCGGGCGATTTCACGAAGCAAAAA
species | Selaginella moellendorffii |
transcript | EFJ10018 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAG GTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAGEST: gi|169030035|gb|FE439188.1|FE439188
genomic: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAGgcaagcgttt ... ccacttccagGTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAG
EST: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAG GTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAGEST: gi|169020452|gb|FE431699.1|FE431699
genomic: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAGgcaagcgttt ... ccacttccagGTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAG
EST: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAG --------A-----CTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAGEST: gi|169046947|gb|FE454558.1|FE454558
genomic: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAGgcaagcgttt ... ccacttccagGTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAG
EST: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAG GTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAG
genomic: GATGGAAGCAAGGCTAAAGTTCTGAAGTACCACATTGTGAAAACTCCCAGgcaagcgttt ... ccacttccagGTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAG
gcaagcgtttctctcttaaaatttctcttgtctgattccacttccagGTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAGATCTCCCCTAAGAGGATTTTACCTCGCGGGCGATTTCACGAAGCAAAAA
gtctgat putative branch site (score: 13)
ttccacttcc CT-rich tract
ttaaaatttctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcgtttctctcttaaaatttctcttgtctgattccacttccagGTCCGTGTATAAGACTGTCCCCGATTGTGAGCCCTGCCGGCCACTCCAGAGATCTCCCCTAAGAGGATTTTACCTCGCGGGCGATTTCACGAAGCAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA