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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctttgataagcgattacttcagaagaggtctctgacgggcgcctacatttttatcagCCAAGAAAGAGCCCGGAAAGGGATTCAGGGTCTGGTGCAGACAGTCCATCCGCTTTACTGAGGCCTCAAAGTGCCAGGAGTGAGAATGGCGGCGGCCAAA

Basic information

species Selaginella moellendorffii
transcript EFJ07617
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169110801|gb|FE513158.1|FE513158
EST:     AGATCCAGGCTCTCAAACAGCAGCTGCAAGTGAATGATGAGGTTGACGAG                         CCAAGAAAGAGCCCGGAAAGGGATTCAGGGTCTGGTGCAGACAGTCCATCC
genomic: AGATCCAGGCTCTCAAACAGCAGCTGCAAGTGAATGATGAGGTTGACGAGgtacgctttg ... tttttatcagCCAAGAAAGAGCCCGGAAAGGGATTCAGGGTCTGGTGCAGACAGTCCATCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgataagcgattacttcagaagaggtctctgacgggcgcctacatttttatcagCCAAGAAAGAGCCCGGAAAGGGATTCAGGGTCTGGTGCAGACAGTCCATCCGCTTTACTGAGGCCTCAAAGTGCCAGGAGTGAGAATGGCGGCGGCCAAA
                           ctctgac  putative branch site (score: 3)
                                             tttttatc  putative PPT
                                         tacatttttat  TA-rich tract