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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctagcattcggttactagttcgaacaaatcctgatgtttatgtgtttgtagGCCATGCTTTGGACGTATTGGCACGGGTTCCACTATGGAAAAGTGGACTGGACTATCGACATGGGACAGGCCACGGTGTTGGCTCCTATCTTAATGTTCA

Basic information

species Selaginella moellendorffii
transcript EFJ06918
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|70669882|gb|DN838459.1|DN838459
EST:     AAAAGGACACATCGCGTTGGATTCGGCCATTTTTCCAAATGGAACAACTG                         GCCATGCTTTGGACGTATTGGCACGGGTTCCACTATGGAAAAGTGGACTGG
genomic: AAAAGGACACATCGCGTTGGATTCGGCCATTTTTCCAAATGGAACAACTGgtatctagca ... gtgtttgtagGCCATGCTTTGGACGTATTGGCACGGGTTCCACTATGGAAAAGTGGACTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatctagcattcggttactagttcgaacaaatcctgatgtttatgtgtttgtagGCCATGCTTTGGACGTATTGGCACGGGTTCCACTATGGAAAAGTGGACTGGACTATCGACATGGGACAGGCCACGGTGTTGGCTCCTATCTTAATGTTCA
                                tcctgat  putative branch site (score: 3)
                                     atgtttat  TA-rich tract