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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttaccgatgcagtttttcttgccgtccccctgatttccgtgaattacgcagAGGAATTTCGTGGAAAGCATGGCCGGCTATTCGATTCTATGCTACTTTCTTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ06373
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169034965|gb|FE445866.1|FE445866
EST:     ACTTTTGCAAAAAGTACGACGAGAATTCGCCAGCGTTTAAGCTTGCACAG                         AGGAATTTCGTGGAAAGCATGGCCGGCTATTCGATTCTATGCTACTTTCTT
genomic: ACTTTTGCAAAAAGTACGACGAGAATTCGCCAGCGTTTAAGCTTGCACAGgtgatttacc ... aattacgcagAGGAATTTCGTGGAAAGCATGGCCGGCTATTCGATTCTATGCTACTTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttaccgatgcagtttttcttgccgtccccctgatttccgtgaattacgcagAGGAATTTCGTGGAAAGCATGGCCGGCTATTCGATTCTATGCTACTTTCTTCAG
                               ccctgat  putative branch site (score: 4)
                tttttctt  TA-rich tract