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gtaactctttacattcgaaattagtgttcctgtgtgtatattgtgttgcttttgtatttgtttgcagGCTCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGCTTTCCATTCTTGCTTACAAGAACAAGGATGTTCCGGCTGGCGGCAAGCT
species | Selaginella moellendorffii |
transcript | EFJ05270 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATGGATGCTGGCATGTGTTCCATCTGCGGTGAAGAAAGTTTCGGAACCG GATCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGCEST: gi|169064896|gb|FE475592.1|FE475592
genomic: GATGGATGCTGGCATGTGTTCCATCTGTGGTGAAGAAAGTTTCGGAACCGgtaactcttt ... ttgtttgcagGCTCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGC
EST: GATGGATGCTGGCATGTGTTCCATCTGTGGTGAAGAAAGTTTCGGAACCG GCTCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGCEST: gi|169047658|gb|FE454826.1|FE454826
genomic: GATGGATGCTGGCATGTGTTCCATCTGTGGTGAAGAAAGTTTCGGAACCGgtaactcttt ... ttgtttgcagGCTCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGC
EST: GATGGATGCTGGCATGTGTTCCATCTGTGGTGAAGAAAGTTTCGGAACCG GATCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGC
genomic: GATGGATGCTGGCATGTGTTCCATCTGTGGTGAAGAAAGTTTCGGAACCGgtaactcttt ... ttgtttgcagGCTCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGC
attcgaaattagtgttcctgtgtgtatattgtgttgcttttgtatttgtttgcagGCTCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGCTTTCCATTCTTGCTTACAAGAACAAGGATGTTCCGGCTGGCGGCAAGCT
tttgttt CT-rich tract
ttttgtatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctttacattcgaaattagtgttcctgtgtgtatattgtgttgcttttgtatttgtttgcagGCTCGGATCACATAAGAGAGAAAGACGGGCTCTGGGCAGTGTTGGCATGGCTTTCCATTCTTGCTTACAAGAACAAGGATGTTCCGGCTGGCGGCAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT