1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttcgtagctttgtgtatatagctagctaaacaactttgaactgttcagCTGGTGGATTCATCTGCTAAGTGGAAGGTTGTTGACAACACTCCAGATGACCCTCGAAAGCGCAAGCCAGACATTACGAAAGCAAAATCCATATTGAAGT
species | Selaginella moellendorffii |
transcript | EFJ35029 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCGAGTTCACAATTCTAGAGCTGGCAGAAGCCGTGCGAGAG CTGGTGGATTCATCTGCTAAGTGGAAGGTTGTTGACAACACTCCAGATGACEST: gi|169050504|gb|FE458883.1|FE458883
genomic: GCGAGTTCACCATTCTAGAGCTGGCAGAAGCCGTGCGAGAGgttcgtagct ... aactgttcagCTGGTGGATTCATCTGCTAAGTGGAAGGTTGTTGACAACACTCCAGATGAC
EST: GCGAGTTCACAATTCTAGAGCTGGCAGAAGCCGTGCGAGAG CTGGTGGATTCATCTGCTAAGTGGAAGGTTGTTGACAACACTCCAGATGAC
genomic: GCGAGTTCACCATTCTAGAGCTGGCAGAAGCCGTGCGAGAGgttcgtagct ... aactgttcagCTGGTGGATTCATCTGCTAAGTGGAAGGTTGTTGACAACACTCCAGATGAC
gttcgtagctttgtgtatatagctagctaaacaactttgaactgttcagCTGGTGGATTCATCTGCTAAGTGGAAGGTTGTTGACAACACTCCAGATGACCCTCGAAAGCGCAAGCCAGACATTACGAAAGCAAAATCCATATTGAAGT
agctaaa putative branch site (score: 11)
tgtatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtagctttgtgtatatagctagctaaacaactttgaactgttcagCTGGTGGATTCATCTGCTAAGTGGAAGGTTGTTGACAACACTCCAGATGACCCTCGAAAGCGCAAGCCAGACATTACGAAAGCAAAATCCATATTGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG