1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgtgttttggttgacgggcgtgaggatctccaatgtgttgtgtctcgcagACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTACAAGACTGGCTGATTATACTTGTTGCGCAATACAACGAGCTCCTTAAGC
species | Selaginella moellendorffii |
transcript | EFJ30507 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTACGAGAGAGCTGACGCAGAAGCTATCTTCTGTATTTTAACTCATAAG ACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTAEST: gi|169049805|gb|FE459353.1|FE459353
genomic: TCTACGAGAGAGCTGACGCAGAAGCTATCTTCTGTATTTTAACTCATAAGgtgtgttttg ... tgtctcgcagACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTA
EST: TCTACGAGAGAGCTGACGCAGAAGCTATCTTCTGTATTTTAACTCATAAG ACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTGCTACTAEST: gi|169020133|gb|FE428520.1|FE428520
genomic: TCTACGAGAGAGCTGACGCAGAAGCTATCTTCTGTATTTTAACTCATAAGgtgtgttttg ... tgtctcgcagACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTA
EST: TCTACGAGAGAGCTGACGCAGAAGCTATCTTCTGTATTTTAACTCATAAG ACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTA
genomic: TCTACGAGAGAGCTGACGCAGAAGCTATCTTCTGTATTTTAACTCATAAGgtgtgttttg ... tgtctcgcagACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTA
gtgtgttttggttgacgggcgtgaggatctccaatgtgttgtgtctcgcagACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTACAAGACTGGCTGATTATACTTGTTGCGCAATACAACGAGCTCCTTAAGC
ggttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttttggttgacgggcgtgaggatctccaatgtgttgtgtctcgcagACGATTCGCGCTTCTTTGGAGGATGGTGTCAAGGAAGGACGACTCCTACTACAAGACTGGCTGATTATACTTGTTGCGCAATACAACGAGCTCCTTAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT