1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gttagtctgctacagtttcctttgccgtgaaatgaggatggcgtaattgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTG
species | Selaginella moellendorffii |
transcript | EFJ29959 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAG CGATCACGAGGGGAGGAAATGT-AGTGCACAEST: gi|169033440|gb|FE441793.1|FE441793
genomic: AAGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAGgttagtctgc ... tgactttcagCGATCACGAGGG-AGGAAATGTTAGTGCACA
EST: AGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAG CGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTGEST: gi|169033441|gb|FE441794.1|FE441794
genomic: AGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAGgttagtctgc ... tgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTG
EST: AAGGAGCCCAANATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAG CGATCACGAGGGAGGAAATGTTAGTGCACATACEST: gi|169051940|gb|FE459044.1|FE459044
genomic: AAGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAGgttagtctgc ... tgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATAC
EST: AAGGAGCCCAAAATGCATGAGCTGATGCGCCTGTATCTTACTATTCATAG CGATCACGAGGGAGGAAATGTTAGTGCACACACCGTGCGCCTGEST: gi|169064916|gb|FE475612.1|FE475612
genomic: AAGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAGgttagtctgc ... tgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTG
EST: AAGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAG CGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTGEST: gi|169059112|gb|FE468257.1|FE468257
genomic: AAGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAGgttagtctgc ... tgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTG
EST: AAGGAGCCCAAAATGCATGAGCTGATGCGCCTGTATCTTACTATTCATAG CGATCACGAGGGAGGAAATGTTAGTGCACACACCGTGCGCCTG
genomic: AAGGAGCCCAAAATGTATGAGCTGATGCGCCTGTATCTTTCTATTCACAGgttagtctgc ... tgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTG
tagtctgctacagtttcctttgccgtgaaatgaggatggcgtaattgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTG
aattgac putative branch site (score: 8)
ctttc CT-rich tract
taattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtctgctacagtttcctttgccgtgaaatgaggatggcgtaattgactttcagCGATCACGAGGGAGGAAATGTTAGTGCACATACCGTGCGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA