1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaatagttcctcttctactattttcttacgctccatactattgacctttgtcctgaagGTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTACGACAAACAGCTCGATAGTGGAAGAGGAACTTTGCTGCATCTTTGCGAC
species | Selaginella moellendorffii |
transcript | EFJ29929 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCAC GTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTAEST: gi|169088688|gb|FE493927.1|FE493927
genomic: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCACgtaatagttc ... tgtcctgaagGTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTA
EST: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCAC GTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTAEST: gi|169088689|gb|FE493928.1|FE493928
genomic: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCACgtaatagttc ... tgtcctgaagGTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTA
EST: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCAC GTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTAEST: gi|169088891|gb|FE492869.1|FE492869
genomic: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCACgtaatagttc ... tgtcctgaagGTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTA
EST: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCAC GTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTA
genomic: TTAGCTATCCTTGGTGGCTTTCTTAGTTACTGCGCTAAGATCTATTTCACgtaatagttc ... tgtcctgaagGTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTA
tagttcctcttctactattttcttacgctccatactattgacctttgtcctgaagGTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTACGACAAACAGCTCGATAGTGGAAGAGGAACTTTGCTGCATCTTTGCGAC
tattgac putative branch site (score: 10)
cctttgtcct CT-rich tract
tattttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagttcctcttctactattttcttacgctccatactattgacctttgtcctgaagGTTCCACGCTAACATGATGGAGTACCAGCGGCTTATCACCAATTCGATGTACGACAAACAGCTCGATAGTGGAAGAGGAACTTTGCTGCATCTTTGCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC