1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgagtttcgtgtgtcttgcagttctttttttttagaaggttttatttgtagcagAATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTGTGTGCTGCCATTTCTCTTCGAGTGGAAAGCTATTGGCCAGTGCTGGCCA
species | Selaginella moellendorffii |
transcript | EFJ29739 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAGCAGEST: gi|169075820|gb|FE480932.1|FE480932
genomic: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCC-AA--AGgtgagtttcg ... tttgtagc
EST: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAG AATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTGEST: gi|169106935|gb|FE505516.1|FE505516
genomic: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAGgtgagtttcg ... tttgtagcagAATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTG
EST: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAG AATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTGEST: gi|169058917|gb|FE468738.1|FE468738
genomic: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAGgtgagtttcg ... tttgtagcagAATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTG
EST: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAG AATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTGEST: gi|169038883|gb|FE449600.1|FE449600
genomic: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAGgtgagtttcg ... tttgtagcagAATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTG
EST: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAG AATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTG
genomic: TGGTCTCTTTAGCAGTACGAAGCCGAGTCCTAATGTCGACGCGTCCAAAGgtgagtttcg ... tttgtagcagAATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTG
gtgagtttcgtgtgtcttgcagttctttttttttagaaggttttatttgtagcagAATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTGTGTGCTGCCATTTCTCTTCGAGTGGAAAGCTATTGGCCAGTGCTGGCCA
ttttattt CT-rich tract
tttttttttagaaggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttcgtgtgtcttgcagttctttttttttagaaggttttatttgtagcagAATTTACGTTCAACTCGGTGGGCTGTCTTCGTGCCAGTACAAATAAAGTTGTGTGCTGCCATTTCTCTTCGAGTGGAAAGCTATTGGCCAGTGCTGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA