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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttcacatttgcgagttttcttttctgagctcttacaatgcagGCCGTGCTCTGGAACATGGACACGCTAAAACTCCGGAGTACATTGGAAGAACACTCGTATTTGATAACCGATGTTCGGTTTAGTCCAAATTCGACGCGGT

Basic information

species Selaginella moellendorffii
transcript EFJ28239
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048295|gb|FE457296.1|FE457296
EST:     ATTTCTCTTCGAGTGGAAAGCTATTGGCCAGTGCTGGCCATGAAAAGAAG                         GCCGTGCTCTGGAATATGGACACGCTAAAACTCCGGAGTACATTGGAAGAA
genomic: ATTTCTCTTCGAGTGGAAAGCTATTGGCCAGTGCTGGCCATGAAAAGAAGgtgagcttca ... tacaatgcagGCCGTGCTCTGGAACATGGACACGCTAAAACTCCGGAGTACATTGGAAGAA
EST: gi|169049084|gb|FE456136.1|FE456136
EST:     ATTTCTCTTCGAGTGGAAAGCTATTGGCCAGTGCTGGCCATGAAAAGAAG                         GCCGTGCTCTGGAATATGGACACGCTAAAACTCCGGAGTACATTGGAAGAA
genomic: ATTTCTCTTCGAGTGGAAAGCTATTGGCCAGTGCTGGCCATGAAAAGAAGgtgagcttca ... tacaatgcagGCCGTGCTCTGGAACATGGACACGCTAAAACTCCGGAGTACATTGGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagcttcacatttgcgagttttcttttctgagctcttacaatgcagGCCGTGCTCTGGAACATGGACACGCTAAAACTCCGGAGTACATTGGAAGAACACTCGTATTTGATAACCGATGTTCGGTTTAGTCCAAATTCGACGCGGT
                                         ctcttac  putative branch site (score: 3)
                                         ctcttac  CT-rich tract
                           ttttctttt  TA-rich tract