1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaactctggacgataggttctagttagtttcgttagaactaaacggtgtgctgtgcagATCGAAAGGGCTGAAAAAATACACCGCGATCGACAAATGGAACACGCAGCTGAGATCTCTGTGCCAGACCGTCTCCAACAGGATCGGCTGAGAGCGAGAG
species | Selaginella moellendorffii |
transcript | EFJ28052 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTCACGGTCACATAGATCAAGTTCATCAGCTCCTGGAGCTCGGTGACAG ATCGAAAGGGCTGAAAAAATACACCGCGATCGACAAATGGAACACGCAGCTEST: gi|169050786|gb|FE459932.1|FE459932
genomic: GTTCACGGTCACATAGATCAAGTTCATCAGCTCCTGGAGCTCGGTGACAGgtaactctgg ... tgctgtgcagATCGAAAGGGCTGAAAAAATACACCGCGATCGACAAATGGAACACGCAGCT
EST: GTTCACGGTCACATAGATCAAGTTCATCAGCTCCTGGAGCTCGGTGACAG ATCGAAAGGGCTGAAAAAATACACCGCGATCGACAAATGGAACACGCAGCT
genomic: GTTCACGGTCACATAGATCAAGTTCATCAGCTCCTGGAGCTCGGTGACAGgtaactctgg ... tgctgtgcagATCGAAAGGGCTGAAAAAATACACCGCGATCGACAAATGGAACACGCAGCT
ctctggacgataggttctagttagtttcgttagaactaaacggtgtgctgtgcagATCGAAAGGGCTGAAAAAATACACCGCGATCGACAAATGGAACACGCAGCTGAGATCTCTGTGCCAGACCGTCTCCAACAGGATCGGCTGAGAGCGAGAG
aactaaa putative branch site (score: 13)
ttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctggacgataggttctagttagtttcgttagaactaaacggtgtgctgtgcagATCGAAAGGGCTGAAAAAATACACCGCGATCGACAAATGGAACACGCAGCTGAGATCTCTGTGCCAGACCGTCTCCAACAGGATCGGCTGAGAGCGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC