1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtctagaggaaaaaatcctccttttgatccttgacaaagcgttgtttactgactttcacgaggattgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATTACATCCGAGTTGCTGCGTGATTTGGATTGATCCACTGGAAGAAGGATT
species | Selaginella moellendorffii |
transcript | EFJ27687 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169112109|gb|FE513452.1|FE513452
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169082641|gb|FE486200.1|FE486200
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169037361|gb|FE443307.1|FE443307
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169082044|gb|FE487995.1|FE487995
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169039921|gb|FE447607.1|FE447607
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169037362|gb|FE443308.1|FE443308
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169071277|gb|FE478409.1|FE478409
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169112907|gb|FE514659.1|FE514659
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169082642|gb|FE486201.1|FE486201
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169044046|gb|FE451632.1|FE451632
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169082043|gb|FE487994.1|FE487994
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169102323|gb|FE506547.1|FE506547
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGTATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169107924|gb|FE513792.1|FE513792
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATEST: gi|169064650|gb|FE471381.1|FE471381
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
EST: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAA GTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
genomic: GCCTGGAAAGGATGAGAACACTTGGCAGGGATATTGGCATCCCGATCGAAgtacgtctag ... tgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGAT
cttttgatccttgacaaagcgttgtttactgactttcacgaggattgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATTACATCCGAGTTGCTGCGTGATTTGGATTGATCCACTGGAAGAAGGATT
tactgac putative branch site (score: 41)
ttgtctc putative PPT
ttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtctagaggaaaaaatcctccttttgatccttgacaaagcgttgtttactgactttcacgaggattgtctcgcagGTTTTTGGACCCGAGGCAAGCATGACTGGCATTTGTAGAAACGCGATCGATTACATCCGAGTTGCTGCGTGATTTGGATTGATCCACTGGAAGAAGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG