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gtacgttttgcgagcgtccggatttattaagctgtttgactattggctgtaaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG
species | Selaginella moellendorffii |
transcript | EFJ25849 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGEST: gi|169054840|gb|FE463444.1|FE463444
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG GCACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGEST: gi|169038934|gb|FE449651.1|FE449651
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGEST: gi|70670362|gb|DN838939.1|DN838939
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGEST: gi|169088100|gb|FE496459.1|FE496459
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGEST: gi|169054839|gb|FE463443.1|FE463443
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG GCACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
gttttgcgagcgtccggatttattaagctgtttgactattggctgtaaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG
gtttgac putative branch site (score: 9)
atttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttttgcgagcgtccggatttattaagctgtttgactattggctgtaaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC