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gtaagtgtcgggctgcctcatgaggaaaaattcttgaccatgatttgtcgccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGGAGCATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGC
species | Selaginella moellendorffii |
transcript | EFJ25399 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169040693|gb|FE447328.1|FE447328
genomic: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagtgtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169112863|gb|FE514615.1|FE514615
genomic: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagtgtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169071156|gb|FE478353.1|FE478353
genomic: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagtgtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169077502|gb|FE485947.1|FE485947
genomic: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagtgtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169087298|gb|FE491711.1|FE491711
genomic: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagtgtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
genomic: TCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagtgtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
gtgtcgggctgcctcatgaggaaaaattcttgaccatgatttgtcgccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGGAGCATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGC
tcttgac putative branch site (score: 12)
aaaaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtcgggctgcctcatgaggaaaaattcttgaccatgatttgtcgccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGGAGCATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA