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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatcaattcgtgctcgcttgatccagcaaaacttaacgttctctactggaaacttttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT

Basic information

species Selaginella moellendorffii
transcript EFJ22768
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 3'ss of exon 11
-----------------------------gtaatatcaattcgtgctcgcttgatccagcaaaac---ttaacgttctctactggaaacttttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT
                             | ||| || |      ||   |  ||     |  ||    |||  ||     |  |     |||| |  |||| |||||||| || ||||| ||||| |||||||||||||||||||| || ||||| |||   || ||||   | ||     | || || |        |
atgatcagacctttttcatttcgagatcagaaatgtccaccacatctttatccatagcttatgacctgctaatattaatcccgtgtgctgtttctttcagTCATACATGGACTCTGAGATCAGAGCAATCATGGCACAGTACATGCCACTGGACAGTCAAGGGGAGGTGCCAAATCATACAAATGATGAAGAACACCATT

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: LOC_Os03g21720.1 (Oryza sativa), 3'ss of exon 11
-------------------------------------------------------gtaatatcaattcgtgctcgcttgatccagcaa--aacttaacgttctctactggaaacttttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT-
                                                       ||   |      | || |  | | ||  ||     ||||  |     |||     |   |    |   ||   |||||||||||||||||| | || |||||||| |||||||||||  | || | |||| | |  |   | || ||       | | ||||| | |  | 
gtaaaacatctaccaccctttatttcctcactttttagttatcatatggccacatgtgggacttgcacctgat-acataattgagttgctaactggattcaatctgtgccatgatgcctcatcagAGCTACATGGATTCGGAGATTCGCGCGATCATGGCCCAGTACATGCCTTTGGATAACCAAGAAGCAGCTAACCAACATCATGTCGCGCATGCT-GGTGATG

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: LOC_Os07g48229.1 (Oryza sativa), 3'ss of exon 11
-----------------------------------------------------gtaatatcaattcgtgctcgct-tgatccagcaaaacttaacgttctctactggaaacttttcctgt-agTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT-
                                                      || | ||   |  || | ||  | ||| |     |  | |   | | |  |   | | |  |     ||  |||||||||||| |||||| | || |||||||| ||||||||||| || || |  ||| |      | |||| ||    |  | ||| || || |  | 
gtaaacaactcatccttctattctaatccatctccgaatgatcacgtaattttctagt-tcttcttatgtttgcaataatctacggctaactcatactttgtgttaccatcatgccaaaccagAGTTACATGGATTCAGAGATTCGTGCGATCATGGCTCAGTACATGCCCCTGGAGAATCAAGAAACACCGAATCAACATCGTCCTGTGGA-GCATGCTGATA

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GRMZM2G347541_T02 (Zea mays), 3'ss of exon 5
--------------------------------------gtaatatcaattcgtgctcgcttgatccagcaaaacttaacgttctctactggaaacttttc----ctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT
                                      |   | | |   |  |||||||   ||  |     | |    |||| | |  | |  |   |    ||| ||   |||||||| ||||||||  | || |||||||| ||||||||||| || |||||||||   || || ||   ||||  |||  |   ||     |   
gtaagatataggcagcctgtaatgcttctttgttcattgccttctgatggctcgctcgctcactctgggttggcgtctgattctgttcctgcatttgcccgtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGGACAGCCAAGGAGATGTCCAGAGCCACGCGCACCATATTGAGATGTGAG

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: AT2G14720.1 (Arabidopsis thaliana), 3'ss of exon 11
--------------------------------------------------------------------------------------------------------gtaatatcaattcgtgctcgcttgatccagcaaaacttaacgttctctactggaaactttt-----cctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT-
                                                                                                           |||||   | |   | |  |     |         |  ||| |  ||| |  |  ||        |  ||   |||||||| || ||||| ||||| || ||||||||||||||||| || |||||||||   || || |   |||||  | | || ||  | ||  |   
gtaagctttttattcatccttctgctatttctgttagaagcaaaagattaatgttttatgttttggttgcctgagatgtctcttaaaacattgttttatgtaacccgatatcgtcttggaattgtatcgattacttgggaaaattgttatgaacttgctatgttcatggatttacagCAATACATGGACTCAGAGATCAGAGCCATAATGGCACAGTACATGCCACTGGACAGCCAACCTGAGGTCCCGAACCACACGAATGATGA-ACGTGCCTAAG

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: AT3G52850.1 (Arabidopsis thaliana), 3'ss of exon 11
------------------------------gtaatatcaattcgtgctcgcttgatccagcaaaacttaacgttctctactggaaacttt--tcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGA-GGATGCTTGATTGT
                               | |||| ||  | |       |  | | |   |  |  |  | ||  | |   || |    |  || ||  |||||||||| |||| |||||||  ||||||||||||||||||||  | || || |||  |  |   ||  |    |  | | | ||||   ||| || 
gtatacgatgttctttactctggtcttgttatcatattaaaacataggaagattttgcggtctagatagagatgcta-agtaacaattgaaattatgcagAGTTACATGGATGCGGAAATTAGAGGGATCATGGCACAGTACATGCCATTGGAAAGTCAAC-CACCCAACACAAGTGGTCACCATATGGATATATGAGTGA

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: AT2G14740.1 (Arabidopsis thaliana), 3'ss of exon 11
--------------------------------------------------gtaatatcaat-tcgtgctcgcttgatccagca-------aaacttaacgttctctactggaaacttt--tcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT-
                                                    || || ||| | ||  | ||   ||||   |       ||| ||    |    | |      |  |  |  |  ||   |||||||| || ||||| ||||| || |||||||||||||||||  | |||||||||  |||  | |   ||||| || | || ||  |  |  ||  
gtaagcttttttaatctcttctgctcttttgttttctgttgtgttaatagcgaagattaatcttgtatttgccatatccgttacttggggaaaattgttttaacattcctatgcccctggttttacagCAATACATGGACTCAGAGATCAGAGCCATAATGGCACAGTACATGCCATTGGACAGCCAACCCGAGATCCCGAACCACGTGAATGATGA-ACGCGCCTGAG

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
---------------------gtaatatcaattcgtgctcgcttgatccagcaaaacttaacgttctc----tactggaaacttttcct-------gtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGC---ATCACCACTTGCAAGAGGATGCTTGATTGT
                     ||  ||       ||  | |||  ||  |   |   | ||  |  |     || ||  |||||    |       | ||   ||||||||||| |||||||| || ||||||||||||||||||||  | || |  |||   ||  | |   ||||       || | |||   ||      
tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---

upper sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: PP1S227_69V6.1 (Physcomitrella patens), 3'ss of exon 13
------------------------------gtaatatcaattcgtgct-cgcttgatccagcaaaacttaacgttctctactggaaacttttcctg--tagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT
                               |  ||  | |||||     |||||| |       | ||||||   |   || |    |  |   |   |||| |||||||| |||||||| || || || ||||| ||||||||||| |||||||||  ||  || ||  |||||||  ||   ||||| || | |    
ttgcatgtctccacaaatggagatctctcttttgtactagttcgtaaagtgcttgaacttatttga-ttaacggatttagcttgtcggtgctgtggaacagTCATACATGGACTCGGAGATAAGGGCAATAATGGCGCAGTACATGCCACTCGACAGCTCAAGTGAAGTTAATCACCATCTGACCGAGGAAGCGTAAAGAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169022717|gb|FE428405.1|FE428405
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169028104|gb|FE435956.1|FE435956
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169096681|gb|FE496811.1|FE496811
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169050285|gb|FE458352.1|FE458352
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169019880|gb|FE426967.1|FE426967
EST:     TTTCAGCTGCCGCTATCGCTGGGTACGTTGTTTACAAATACAGGCTCCGG                         TTTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169081666|gb|FE491320.1|FE491320
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169109250|gb|FE510230.1|FE510230
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169096537|gb|FE499449.1|FE499449
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169082427|gb|FE488989.1|FE488989
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169075666|gb|FE482052.1|FE482052
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169031591|gb|FE439056.1|FE439056
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169080525|gb|FE488463.1|FE488463
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169102388|gb|FE507080.1|FE507080
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169028103|gb|FE435955.1|FE435955
EST:     TTTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169022716|gb|FE428404.1|FE428404
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169115682|gb|FE517268.1|FE517268
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169026482|gb|FE434769.1|FE434769
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169045242|gb|FE453555.1|FE453555
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169107250|gb|FE508249.1|FE508249
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169096538|gb|FE499450.1|FE499450
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169083003|gb|FE488525.1|FE488525
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169114821|gb|FE516082.1|FE516082
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
EST: gi|169080940|gb|FE486109.1|FE486109
EST:     TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGG                         TCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC
genomic: TCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 29

CTCCACCGCGAAAGTTGGCTGGGTTGTCATCTTCACTGTTCTTGGTGGACTCTCAGCTGCCGCTATCGCTGGCTACGTTGTTTACAAATACAGGCTCCGGgtaatatcaa ... tttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctcgcttgatccagcaaaacttaacgttctctactggaaacttttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT
                     acttaac  putative branch site (score: 29)
                                           cttttcctgt  putative PPT
                  aaaacttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatatcaattcgtgctcgcttgatccagcaaaacttaacgttctctactggaaacttttcctgtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGCATCACCACTTGCAAGAGGATGCTTGATTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG