1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaacatttcctctttctttttagtacgctttgttgttgacgctatgtcttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGATGGTGGTGACGAAGACTAGGTAGATTTGCTAACAGTAAGCTGTATCTTTG
species | Selaginella moellendorffii |
transcript | EFJ21647 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAG ATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGATEST: gi|169034405|gb|FE446376.1|FE446376
genomic: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAGgtaaacattt ... cttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGAT
EST: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAG ATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGATEST: gi|169036843|gb|FE443829.1|FE443829
genomic: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAGgtaaacattt ... cttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGAT
EST: CGATTAAGTTGGCATCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAG ATTATCATGGCCAAACCGGCTGGAGGCCC-AAAGAAGAATCCCGGAGCAGAEST: gi|169070714|gb|FE477313.1|FE477313
genomic: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAGgtaaacattt ... cttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAA-AAGAATCCCGGAGCAGA
EST: CGATTAAGTTGGCATCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAG ATTATCATGGCCAAACCGGCTGGAGGCCC-AAAGAAGAATCCCGGAGCAGAEST: gi|169072127|gb|FE479883.1|FE479883
genomic: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAGgtaaacattt ... cttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAA-AAGAATCCCGGAGCAGA
EST: CGATTAAGTTGGCATCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAG ATTATCATGGCCAAACCGGCTGGAGGCCC-AAAGAAGAATCCCGGAGCAGAEST: gi|169034975|gb|FE444836.1|FE444836
genomic: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAGgtaaacattt ... cttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAA-AAGAATCCCGGAGCAGA
EST: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAG ATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGAT
genomic: CGATTAAGTTGGCGTCGAGAGCCGCCACTACCGTGCTCAAGATAGATCAGgtaaacattt ... cttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGAT
acatttcctctttctttttagtacgctttgttgttgacgctatgtcttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGATGGTGGTGACGAAGACTAGGTAGATTTGCTAACAGTAAGCTGTATCTTTG
tgttgac putative branch site (score: 16)
tgtctttt putative PPT
tttcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatttcctctttctttttagtacgctttgttgttgacgctatgtcttttggtagATTATCATGGCCAAACCGGCGGGAGGCCCGAAAAAGAATCCCGGAGCAGATGGTGGTGACGAAGACTAGGTAGATTTGCTAACAGTAAGCTGTATCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG