1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagctctgatccctgacactgtttttattcactcaaagacgatacttcgtttaaatatacagGCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAGCCATGTATATGAAGCTGACG
species | Selaginella moellendorffii |
transcript | EFJ21593 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGCAGAGATTCGTGTCCAATTCAAAGACGTCCCGGGGGATATTTTCAAAT GCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAGEST: gi|169031484|gb|FE437194.1|FE437194
genomic: GGCAGAGATTCGTGTCCAATTCAAAGACGTCCCGGGGGATATTTTCAAATgtaagctctg ... aaatatacagGCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAG
EST: GGCAGAGATTCGTGTCCAATTCAAAGACGTCCCGGGGGATATTTTCAAAT GCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAGEST: gi|169075232|gb|FE481527.1|FE481527
genomic: GGCAGAGATTCGTGTCCAATTCAAAGACGTCCCGGGGGATATTTTCAAATgtaagctctg ... aaatatacagGCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAG
EST: GGCAGAGATTCGTGTCCAATTCAAAGACGTCCCGGGGGATATTTTCAAAT GCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAG
genomic: GGCAGAGATTCGTGTCCAATTCAAAGACGTCCCGGGGGATATTTTCAAATgtaagctctg ... aaatatacagGCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAG
gatccctgacactgtttttattcactcaaagacgatacttcgtttaaatatacagGCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAGCCATGTATATGAAGCTGACG
ccctgac putative branch site (score: 51)
ttcgtttaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctgatccctgacactgtttttattcactcaaagacgatacttcgtttaaatatacagGCAAAAAACAGGGACGAAACGAGTTTGTCATGCGATTGCAACCTTCAGAAGCCATGTATATGAAGCTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA