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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagttctttccataatcttgtgacaaactcctggtggcagGCCCGTGTTTTTGAAGGCAAGGAGCCTTCACAGTTTTTTGCGTTATTTTCAAGCCTGGTCATTTTCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ19773
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169080133|gb|FE487941.1|FE487941
EST:     TTTCTCACGTTGAAGAGATCTCCTCTTCTTTTAAAGGACGTCTAGTACAA                         GCCCGTGTTTTTGAAGGCAAGGAGCCTTCACAGTTTTTTGCGTTATTTTCA
genomic: TTTCTCACGTTGAAGAGATCTCCTCTTCTTTTAAAGGACGTCTAGTACAAgtgagtagtt ... ctggtggcagGCCCGTGTTTTTGAAGGCAAGGAGCCTTCACAGTTTTTTGCGTTATTTTCA
EST: gi|169073702|gb|FE481388.1|FE481388
EST:     TTTCTCACGTTGAAGAGATCTCCTCTTCTTTTAAAGGACGTCTAGTACAA                         GCCCGTGTGTTTGAAGGCAAGGAGCCTTCACAGTTTATTGCGTTATTTTCA
genomic: TTTCTCACGTTGAAGAGATCTCCTCTTCTTTTAAAGGACGTCTAGTACAAgtgagtagtt ... ctggtggcagGCCCGTGTTTTTGAAGGCAAGGAGCCTTCACAGTTTTTTGCGTTATTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtagttctttccataatcttgtgacaaactcctggtggcagGCCCGTGTTTTTGAAGGCAAGGAGCCTTCACAGTTTTTTGCGTTATTTTCAAGCCTGGTCATTTTCAAG
                                                   ctcct  CT-rich tract
                          ataatctt  TA-rich tract